BtaEX6069743 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024496 | ELA2A
Description
Bos taurus chymotrypsin-like elastase family, member 2A (CELA2A), mRNA. [Source:RefSeq mRNA;Acc:NM_174714]
Coordinates
chr16:53281238-53288124:-
Coord C1 exon
chr16:53288036-53288124
Coord A exon
chr16:53283132-53283229
Coord C2 exon
chr16:53281238-53281366
Length
98 bp
Sequences
Splice sites
3' ss Seq
TCACCTGTGCCTCTTCCCAGGTC
3' ss Score
10.9
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
CTCTCAGCTGTGGAGTCCCCACTTACCCACCACAACTGTCCAGAGTGGTTGGAGGTGAAGATGCAAGGCCCAACAGCTGGCCCTGGCAG
Seq A exon
GTCTCCCTGCAGTACAGCTCCAGTGGCCAGTGGCGTCACACCTGCGGAGGGTCTCTGATAGAACAAAATTGGGTCCTGACAGCAGCCCACTGCATCAG
Seq C2 exon
CTCCTCCAGGACCTACCGAGTGGTGGTGGGCCGGCAGAGTCTCTCCACCGTTGAGTCTGGCTCACTGACCATCGCAGTCTCCAAGTCCGTGATACACGAGAAGTGGAACTCCAACCAGCTCGCCCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024496-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(6.0=46.7)
A:
PF0008921=Trypsin=FE(13.7=100)
C2:
PF0008921=Trypsin=FE(18.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACTTACCCACCACAACTG
R:
GTATCACGGACTTGGAGACTGC
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]