GgaEX0006167 @ galGal3
Exon Skipping
Gene
ENSGALG00000004568 | E1BQL7_CHICK
Description
NA
Coordinates
chr21:5729387-5730855:+
Coord C1 exon
chr21:5729387-5729475
Coord A exon
chr21:5730244-5730341
Coord C2 exon
chr21:5730727-5730855
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTGATATATATTGATCCTAGGCC
3' ss Score
5.62
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
CCCTTGGCTGCGGGGTTCCTGCCTACCCACCTGCTGTGTCTCGAGTTGTTGGAGGGGAAGATGCAAGACCATACAGCTGGCCCTGGCAG
Seq A exon
GCCTCTCTTCAATATCAATCAAGTGGTAAATGGTATCACACCTGTGGAGGAACCCTCATTGCAACCAACTGGGTGTTGACAGCTGCACACTGCATCAG
Seq C2 exon
TTCTACCAGGAAATATCGAGTGCTTCTTGGAAAATACAACCTAGAAGCTGAGGAGCAAGGATCTGTCACAGCCTCCACAGAAAAAATCATTGTCCATGAGAAATGGAATCGGTTCAGCGTTGCAAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004568_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(6.0=46.7)
A:
PF0008921=Trypsin=FE(13.7=100)
C2:
PF0008921=Trypsin=FE(18.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGTTGTTGGAGGGGAAGA
R:
CTTGCAACGCTGAACCGATTC
Band lengths:
175-273
Functional annotations
There are 0 annotated functions for this event