MmuEX6097656 @ mm9
Exon Skipping
Gene
ENSMUSG00000058579 | Cela2a
Description
chymotrypsin-like elastase family, member 2A [Source:MGI Symbol;Acc:MGI:95316]
Coordinates
chr4:141370877-141375042:-
Coord C1 exon
chr4:141374897-141375042
Coord A exon
chr4:141373780-141373932
Coord C2 exon
chr4:141370877-141370970
Length
153 bp
Sequences
Splice sites
3' ss Seq
CCCAACTCTGGCTTCTACAGGGG
3' ss Score
7.69
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
CCAATGGGAACAGTCCTGACACCCTGAGGCAGGGCCGCCTGCTGGTTGTGGACTATGCCACCTGCTCCAGCGCTAGCTGGTGGGGAAGCTCTGTGAAGTCCAGCATGGTGTGCGCTGGTGGCGACGGCGTGACCTCCAGCTGCAAT
Seq A exon
GGGGACTCTGGCGGACCACTGAATTGCCGGGCATCTAATGGCCAGTGGCAGGTGCATGGCATCGTGAGCTTCGGCTCCTCTCTGGGCTGCAACTACCCCCGCAAGCCATCCGTCTTCACCAGGGTCTCCAACTACATTGACTGGATCAACTCG
Seq C2 exon
GTGATGGCAAGGAACTAACTGAAGACATTACTGCCACTGTCCCCCTGGAAATGCCATAGAAAAGAAATAGTAATAAAGTAATTTAAGAATCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058579-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.5=100)
A:
PF0008921=Trypsin=PD(20.5=94.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAGTCCTGACACCCTGA
R:
GCATTTCCAGGGGGACAGTG
Band lengths:
194-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: