GgaEX6024235 @ galGal3
Exon Skipping
Gene
ENSGALG00000013701 | F1P457_CHICK
Description
NA
Coordinates
chr21:4994905-4995464:-
Coord C1 exon
chr21:4995319-4995464
Coord A exon
chr21:4995061-4995210
Coord C2 exon
chr21:4994905-4994976
Length
150 bp
Sequences
Splice sites
3' ss Seq
ATGGCGCCCTGCCCGGGTAGGGG
3' ss Score
5.61
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CCAACGGGCCGCTGGCGGAGGTCCTGCAGCAGGCCCTGCTGCCCGTGGTGGACTACGCAACGTGCTCACAGAGCGACTGGTGGGGCGGCCTGGTGAGGACCTCCATGGTCTGCGCTGGTGGTGACGGTGTCGTCTCAGGATGCAAC
Seq A exon
GGGGATTCGGGTGGCCCCCTGAGCTGCCAACGCAATGGCCTCTGGGAGGTGCACGGCATCGTCAGCTTCGGCTCCTCCTGGGGCTGCAACACAGCCAAGAAACCAACAGTCTTCACGCGGGTGTCCGCCTACATCGATTGGATCAACGAG
Seq C2 exon
AAAATCAGTGAGAACTGAGGATGCGCAGCGTGGGTCACACATCATGGTGTGCAATAAAGGGAAACAACCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013701-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(25.3=100)
A:
PF0008921=Trypsin=PD(3.2=75.0)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCGGAGGTCCTGCAG
R:
GCTGGTTGTTTCCCTTTATTGCA
Band lengths:
207-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]