HsaEX6028599 @ hg19
Exon Skipping
Gene
ENSG00000162438 | CTRC
Description
chymotrypsin C (caldecrin) [Source:HGNC Symbol;Acc:2523]
Coordinates
chr1:15771101-15773149:+
Coord C1 exon
chr1:15771101-15771246
Coord A exon
chr1:15772092-15772244
Coord C2 exon
chr1:15773070-15773149
Length
153 bp
Sequences
Splice sites
3' ss Seq
GCCCTCCCGGTCTGGTGCAGGGG
3' ss Score
7.62
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
CCAACGGCCCCATTGCTGATAAGCTGCAGCAGGGCCTGCAGCCCGTGGTGGATCACGCCACGTGCTCCAGGATTGACTGGTGGGGCTTCAGGGTGAAGAAAACCATGGTGTGCGCTGGGGGCGATGGCGTCATCTCAGCCTGCAAT
Seq A exon
GGGGACTCCGGTGGCCCACTGAACTGCCAGTTGGAGAACGGTTCCTGGGAGGTGTTTGGCATCGTCAGCTTTGGCTCCCGGCGGGGCTGCAACACCCGCAAGAAGCCGGTAGTCTACACCCGGGTGTCCGCCTACATCGACTGGATCAACGAG
Seq C2 exon
AAAATGCAGCTGTGATTTGTTGCTGGGAGCGGCGGCAGCGAGTCCCTGCAACAGCAATAAACTTCCTTCTCCTCGGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162438-'6-7,'6-6,7-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.6=100)
A:
PF0008921=Trypsin=PD(20.6=94.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACGGCCCCATTGCTG
R:
TGGCCCGAGGAGAAGGAAG
Band lengths:
226-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)