MmuEX7002599 @ mm10
Exon Skipping
Gene
ENSMUSG00000062478 | Ctrc
Description
chymotrypsin C (caldecrin) [Source:MGI Symbol;Acc:MGI:1923951]
Coordinates
chr4:141838239-141840396:-
Coord C1 exon
chr4:141840251-141840396
Coord A exon
chr4:141838653-141838805
Coord C2 exon
chr4:141838239-141838314
Length
153 bp
Sequences
Splice sites
3' ss Seq
GGCCTGCTGTTCTGCTGCAGGGA
3' ss Score
8.74
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
CCAACGGTCCCATTGCTGAAGTGCTCCAGCAGGGTCTGCAGCCCATAGTGAACCACACCACGTGCTCCAGGTTGGACTGGTGGTTCATCAAGGTCCGGGAGACGATGGTGTGCGCTGGTGGTGACGGTGTCATCTCTGCCTGTAAC
Seq A exon
GGAGACTCTGGTGGCCCACTGAACTGCCCAGTGGAAGACGGCTTGTGGCAGGTGCATGGCATCGTGAGCTTTGGTTCCAGTAGAGGCTGCAACACATACAAGAAGCCCGTGGTCTTCACCCGTGTGTCTGCCTATATTGACTGGATCAAGGAG
Seq C2 exon
AAAATACAACTGTGAAGAGACGGTTCCAGAAGTCTCGACGCCCATCTCCCAACAGCAATAAAGCTCCTTCCATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062478-'17-12,'17-11,18-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.7=100)
A:
PF0008921=Trypsin=PD(20.7=94.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGGTCCCATTGCTGAAGT
R:
ATGGAAGGAGCTTTATTGCTGT
Band lengths:
218-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types