DreEX6049597 @ danRer10
Exon Skipping
Gene
ENSDARG00000056744 | ela2
Description
elastase 2 [Source:ZFIN;Acc:ZDB-GENE-041117-1]
Coordinates
chr8:21348774-21349649:+
Coord C1 exon
chr8:21348774-21348919
Coord A exon
chr8:21349310-21349462
Coord C2 exon
chr8:21349559-21349649
Length
153 bp
Sequences
Splice sites
3' ss Seq
ATATAACCTGACTGCTGCAGGGT
3' ss Score
4.1
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CCGGTGGTCCCATTGCTGATATCCTGCAGCAGGCTCTGCTCCCTATTGTGGATCAAGCTACCTGCACTAAATCTGACTGGTGGGGCAACCTCGTGACCGACCTCATGGTGTGCGCTGGTGGAGATGGAGTTGTGTCCAGCTGCAAT
Seq A exon
GGTGATTCTGGTGGCCCTCTGAACTGCCAGAGACGTGACGGCACCTGGGATGTTCACGGCATTGTGAGTTTTGGCTCCAGCTTGGGCTGCAACTACCCCAAGAAACCCTCCGTCTTCACCCGTGTGTCTGGATACATTCCCTGGATCAACAAA
Seq C2 exon
GTGATGACCTCTTATTAAAGCTTGGAAGGCGTGGATACCTCAAATTAAACAACAAAATAAATGTGGGATTAATAAACATGATTCTCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056744-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.7=100)
A:
PF0008921=Trypsin=PD(20.7=94.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGTGGTCCCATTGCTGATA
R:
TGGAGAATCATGTTTATTAATCCCAC
Band lengths:
234-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]