HsaEX6028599 @ hg38
Exon Skipping
Gene
ENSG00000162438 | CTRC
Description
chymotrypsin C [Source:HGNC Symbol;Acc:HGNC:2523]
Coordinates
chr1:15443419-15446654:+
Coord C1 exon
chr1:15443419-15443555
Coord A exon
chr1:15445597-15445749
Coord C2 exon
chr1:15446575-15446654
Length
153 bp
Sequences
Splice sites
3' ss Seq
GCCCTCCCGGTCTGGTGCAGGGG
3' ss Score
7.62
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
CAATGATATTGCCCTCATCAAGCTTGCAGAGCATGTGGAGCTGAGTGACACCATCCAGGTGGCCTGCCTGCCAGAGAAGGACTCCCTGCTCCCCAAGGACTACCCCTGCTATGTCACCGGCTGGGGCCGCCTCTGGA
Seq A exon
GGGGACTCCGGTGGCCCACTGAACTGCCAGTTGGAGAACGGTTCCTGGGAGGTGTTTGGCATCGTCAGCTTTGGCTCCCGGCGGGGCTGCAACACCCGCAAGAAGCCGGTAGTCTACACCCGGGTGTCCGCCTACATCGACTGGATCAACGAG
Seq C2 exon
AAAATGCAGCTGTGATTTGTTGCTGGGAGCGGCGGCAGCGAGTCCCTGCAACAGCAATAAACTTCCTTCTCCTCGGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162438-'7-13,'7-11,10-13=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
PF0008921=Trypsin=PD(20.6=94.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCCCTCATCAAGCTTGCA
R:
TGGCCCGAGGAGAAGGAAG
Band lengths:
210-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains