BtaEX6069753 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024497 | CTRC
Description
Bos taurus chymotrypsin C (caldecrin) (CTRC), mRNA. [Source:RefSeq mRNA;Acc:NM_001098965]
Coordinates
chr16:53295217-53297246:-
Coord C1 exon
chr16:53297101-53297246
Coord A exon
chr16:53295805-53295957
Coord C2 exon
chr16:53295217-53295291
Length
153 bp
Sequences
Splice sites
3' ss Seq
GCCCACCTCATCTGGTGCAGGGG
3' ss Score
6.08
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CCAACGGCCCCATTGCCGCAGAGCTGCAGCAGGGCCTGCAGCCCGTGGTGGATTATGCCACGTGCTCCCAGAGAGACTGGTGGGGCACCACGGTGAAGGAAACCATGGTCTGTGCCGGGGGCGATGGAGTCATCTCAGCCTGCAAC
Seq A exon
GGGGACTCGGGCGGCCCCCTGAACTGCCAAGCCGAGAACGGCAACTGGGATGTGCGAGGCATCGTCAGCTTCGGCTCCGGGCTGAGCTGCAACACCTTCAAGAAGCCAACGGTCTTCACCCGTGTGTCTGCATACATCGACTGGATCAACCAG
Seq C2 exon
AAACTGCAGCTGTGATTCATCCCCAGGAGCCCAGGCCACAAATCCCAACAACCACAATAAACCTCTCTCCCCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024497-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.6=100)
A:
PF0008921=Trypsin=PD(20.6=94.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATTGCCGCAGAGCTG
R:
GGGGGAGAGAGGTTTATTGTGG
Band lengths:
211-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]