RnoEX6024319 @ rn6
Exon Skipping
Gene
ENSRNOG00000013745 | Ctrc
Description
chymotrypsin C [Source:RGD Symbol;Acc:1308379]
Coordinates
chr5:160394580-160397327:-
Coord C1 exon
chr5:160397182-160397327
Coord A exon
chr5:160395187-160395339
Coord C2 exon
chr5:160394580-160394752
Length
153 bp
Sequences
Splice sites
3' ss Seq
GGCCTACTGCCTTGCTGCAGGGA
3' ss Score
7.44
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
CCAATGGTCCCATCGCTGAAGTGCTCCAGCAGGGCCTGCAGCCCATCGTGAGCCATGCCACGTGCTCCAGGTTGGACTGGTGGTTCATCAAGGTCCGGAAGACGATGGTGTGCGCTGGGGGTGATGGCGTCATCTCTGCCTGTAAC
Seq A exon
GGAGATTCTGGCGGCCCACTGAACTGCCAAGCAGAAGACGGCTCATGGCAGGTGCACGGCATCGTGAGCTTCGGTTCCAGTAGCGGCTGCAACGTACACAAGAAACCGGTAGTCTTCACCCGAGTGTCTGCCTACAATGACTGGATCAACGAG
Seq C2 exon
AAAATACAACTGTGAAGAGGCCGTTCCAGAAGTCTCGCTGCCCGTCTCCCAACAGCAATAAAGCTTCCTCCATGATTGACTGAGTACATTCATTTATGTCTTCTGGGGGTTCCTGGGTCTCCAAGCACTGGAAACAGATACCCTAGGCCAGGCTGTAGAGACTTAAGGAAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013745-'7-9,'7-7,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.6=100)
A:
PF0008921=Trypsin=PD(20.6=94.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTGGACTGGTGGTTCAT
R:
AGTCTCTACAGCCTGGCCTAG
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]