DreEX0029632 @ danRer10
Exon Skipping
Gene
ENSDARG00000056765 | ela2l
Description
elastase 2 like [Source:ZFIN;Acc:ZDB-GENE-040511-1]
Coordinates
chr8:21336946-21338163:-
Coord C1 exon
chr8:21338018-21338163
Coord A exon
chr8:21337178-21337330
Coord C2 exon
chr8:21336946-21337041
Length
153 bp
Sequences
Splice sites
3' ss Seq
TCATGTCCCACTCGACACAGGGT
3' ss Score
5.28
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTAATGGACCCCTGGCCGATATCCTGCAGCAGGCTCTTCTGCCCGTGGTGGATCATGCCACCTGCTCCAAGTCTGACTGGTGGGGCTCTCAGGTCACCACAAGCATGGTGTGCGCTGGTGGAGATGGTGTTGTTGCTGGATGTAAT
Seq A exon
GGTGACTCGGGTGGTCCTCTGAACTGCGCTGGCAGCGATGGAGCCTGGGAGGTCCACGGTATCGTGAGCTTCGGTTCAGGATTGAGCTGCAATTATAACAAGAAGCCCACCGTGTTCACCCGCGTGAGCGCCTACAGCGACTGGATCAGCAAG
Seq C2 exon
AACATGGCCAGCTATTAAACTTCAAACAGAAATGGGATTTGTATCATCGATGCCTTGAAAAAAATTTAAAAATAAAATAAAATAAAAATGTGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056765-'6-11,'6-10,7-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.7=100)
A:
PF0008921=Trypsin=PD(20.7=94.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAATGGACCCCTGGCCGATA
R:
AAGGCATCGATGATACAAATCCCA
Band lengths:
202-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]