BtaEX6069747 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024496 | ELA2A
Description
Bos taurus chymotrypsin-like elastase family, member 2A (CELA2A), mRNA. [Source:RefSeq mRNA;Acc:NM_174714]
Coordinates
chr16:53272046-53277395:-
Coord C1 exon
chr16:53277250-53277395
Coord A exon
chr16:53275942-53276094
Coord C2 exon
chr16:53272046-53272137
Length
153 bp
Sequences
Splice sites
3' ss Seq
ACAACTCTGCTCTTTCCCAGGGG
3' ss Score
8
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
GCAATGGAGCTCTTCCTGACATCCTGCAGCAGGGCAAGCTGCTCGTTGTGGACTATGCCACATGCTCCCAACCTAGTTGGTGGGGCAGCACTGTGAAGACCAATATGATCTGTGCTGGGGGAGACGGCGTGACCTCCAGCTGCAAT
Seq A exon
GGGGACTCCGGCGGGCCACTGAACTGCCAGGCGGCTAACGGCCAGTGGCAGGTGCACGGCATAGTCAGCTTCGGGTCCTCCCTCGGCTGCAACTACTACCGCAAGCCCTCCGTCTTCACCCGGGTCTCCAACTACAATGACTGGATCAGTTCG
Seq C2 exon
GTGATTGAAAATAACTAACCACCAGAAGTCCCTGGGACTGTTTCAGGCTTGGAAAGGTCACAGGAGAAAAATAACAATAAAGTGACTACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024496-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.5=100)
A:
PF0008921=Trypsin=PD(20.5=94.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGGAGCTCTTCCTGACA
R:
TTATTGTTATTTTTCTCCTGTGACCT
Band lengths:
226-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]