GgaEX6024314 @ galGal3
Exon Skipping
Gene
ENSGALG00000004568 | E1BQL7_CHICK
Description
NA
Coordinates
chr21:5732310-5733534:+
Coord C1 exon
chr21:5732310-5732455
Coord A exon
chr21:5732578-5732730
Coord C2 exon
chr21:5733374-5733534
Length
153 bp
Sequences
Splice sites
3' ss Seq
ACGTTTCCTCTTCTTCTCAGGGG
3' ss Score
9.62
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
CAAATGGAGCTCTCCCAGATGAACTGCAGCAAGGCCTGTTGCTGGTAGTAGATTATGCAACTTGTTCCAAGACCAACTGGTGGGGAAGCACGGTGAAAACCAACATGGTGTGCGCTGGTGGAGATGGAATCACCTCCAGTTGTAAC
Seq A exon
GGGGACTCTGGTGGTCCACTGAACTGTCAAAATGCAGATGGCGCATGGGAAGTGCATGGTATTGTCAGCTTTGGCTCTTCTCTTGGCTGCAACTATTATCAGAAGCCTTCTGTCTTCACCCGGGTCTCTGCTTTCGACAGCTGGATCAAGAAG
Seq C2 exon
GTTATAGAAAACAACTAATCCAGAGAGACCTGCGTGACAGATGAGAACAGTGCCAAGAACAACAGTTTGAATGAAGTCATAATCATGACACCTTTGATCACTGATAGCTGGGAAATTATGCTTTTAACTGCAATAAACACTGTTTTTTGCAACATGAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004568-'5-9,'5-8,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.5=100)
A:
PF0008921=Trypsin=PD(20.5=94.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTCCCAGATGAACTGCA
R:
CCCAGCTATCAGTGATCAAAGGT
Band lengths:
251-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]