RnoEX0019613 @ rn6
Exon Skipping
Gene
ENSRNOG00000013628 | Cela2a
Description
chymotrypsin-like elastase family, member 2A [Source:RGD Symbol;Acc:2548]
Coordinates
chr5:160374031-160379002:-
Coord C1 exon
chr5:160378857-160379002
Coord A exon
chr5:160377585-160377737
Coord C2 exon
chr5:160374031-160374119
Length
153 bp
Sequences
Splice sites
3' ss Seq
CCCCACTCTGGCTTCCTCAGGGG
3' ss Score
7.85
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
CCAATGGAGCCACTCCTGACGTCCTGCAGCAGGGCCGTCTGCTGGTTGTGGACTATGCCACCTGCTCCAGCGCTAGCTGGTGGGGAAGCTCCGTGAAGACCAACATGGTGTGCGCTGGTGGCGACGGTGTGACCTCCAGCTGCAAT
Seq A exon
GGGGACTCCGGCGGACCACTGAATTGCCAGGCATCTAATGGCCAGTGGCAGGTGCACGGTATTGTGAGCTTTGGCTCCACTCTGGGCTGCAACTACCCCCGTAAGCCATCTGTCTTCACCAGGGTCTCCAACTACATCGACTGGATCAACTCG
Seq C2 exon
GTGATTGCAAAGAACTAAGCAAAGGCATCTCTGTGACTGTCACCTTGGGAACGCACGGAAGGGACACAGTAATAAAGTGACTTAGGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013628-'5-8,'5-7,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.5=100)
A:
PF0008921=Trypsin=PD(20.5=94.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCACTCCTGACGTCCT
R:
CCTAAGTCACTTTATTACTGTGTCCC
Band lengths:
226-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]