HsaEX1008151 @ hg38
Exon Skipping
Gene
ENSG00000215704 | CELA2B
Description
chymotrypsin like elastase family member 2B [Source:HGNC Symbol;Acc:HGNC:29995]
Coordinates
chr1:15465909-15491400:+
Coord C1 exon
chr1:15465909-15466144
Coord A exon
chr1:15467386-15467538
Coord C2 exon
chr1:15491295-15491400
Length
153 bp
Sequences
Splice sites
3' ss Seq
ATAACTCTGGCCTTCCTCAGGGA
3' ss Score
7.84
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
CAGGAACAGGGGAAACCTAAGACGGGTCCATCACTTCCTTTTTCTCAGGAGTCCCTGCATCCCTAATGGCTTCTCTCTGATCTCATTCAGCCAACGGGGCTGTTCCTGATGTCCTGCAGCAGGGCCGGTTGCTGGTTGTGGACTATGCCACCTGCTCCAGCTCTGCCTGGTGGGGCAGCAGCGTGAAAACCAGTATGATCTGTGCTGGGGGTGATGGCGTGATCTCCAGCTGCAAC
Seq A exon
GGAGACTCTGGCGGGCCACTGAACTGTCAGGCGTCTGACGGCCGGTGGCAGGTGCACGGCATCGTCAGCTTCGGGTCTCGCCTCGGCTGCAACTACTACCACAAGCCCTCCGTCTTCACGCGGGTCTCCAATTACATCGACTGGATCAATTCG
Seq C2 exon
GTGATTGCAAATAACTAACCAAAAGAAGTCCCTGGGACTGTTTCAGACTTGGAAAGGTCACAGAAGGAAAATAATATTATATAAAGTGACAACTATGCAAATCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215704_MULTIEX1-1/8=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGGGTCCATCACTTCCTT
R:
TCCCAGGGACTTCTTTTGGTT
Band lengths:
254-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains