DreEX0029635 @ danRer10
Exon Skipping
Gene
ENSDARG00000007276 | ela3l
Description
elastase 3 like [Source:ZFIN;Acc:ZDB-GENE-060710-2]
Coordinates
chr5:25511443-25513909:-
Coord C1 exon
chr5:25513764-25513909
Coord A exon
chr5:25512512-25512664
Coord C2 exon
chr5:25511443-25511543
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTAAACCTTCAACAGGGA
3' ss Score
6.03
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
CTGGTGGTGCTCTTCCTGACAGACTTCAGCAGGCTCTGATGCCCGCTGTGGATCACGCCACCTGCTCCAGGTTTGACTGGTGGGGCTCCAGTGTCAAGGAGACCATGGTCTGCGCTGGTGGAGATGGTGTTGTCGCTGGATGCAAT
Seq A exon
GGAGACTCCGGCGGTCCTCTGAACTGCAAGAACTCTGACGGCATCTGGGAGGTCCACGGTATTGCCAGCTTTGTGTCTGGTTTGGGCTGTAACACTATTAGGAAGCCTACTGTTTTCACCCGCGTGTCTTCTTTCACTGACTGGGTTGACAAG
Seq C2 exon
GTCATGATGAACAACTAAGAAGAAACGAGGATGTCGTTATATTAATACCAGAAAACCAACACACAGAGAAGAAAGTAAATAAAAGCATAATGACTCAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007276-'8-10,'8-9,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.5=100)
A:
PF0008921=Trypsin=PD(20.5=94.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGGTGCTCTTCCTGACA
R:
ATTTACTTTCTTCTCTGTGTGTTGGT
Band lengths:
226-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]