MmuEX6099475 @ mm9
Exon Skipping
Gene
ENSMUSG00000036646 | Man1b1
Description
mannosidase, alpha, class 1B, member 1 [Source:MGI Symbol;Acc:MGI:2684954]
Coordinates
chr2:25204091-25205102:+
Coord C1 exon
chr2:25204091-25204211
Coord A exon
chr2:25204690-25204887
Coord C2 exon
chr2:25204971-25205102
Length
198 bp
Sequences
Splice sites
3' ss Seq
AGGAGATACTTTGATTCCAGGAC
3' ss Score
1.84
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTTGCTGGAAGACTATGTTAAAGCCATTGAGGGGATAAAAGCCCATCTGCTCCGGCAGTCTCAGCCCAGAAAGCTCACCTTCGTGGGAGAACTTGCCCACGGCCGCTTCAGTGCCAAGATG
Seq A exon
GACCACTTAGTGTGCTTCCTGCCGGGGACGCTGGCTTTGGGTGTCCACCATGGCCTGCCAGCTGACCACATGGATCTAGCTCGGGCCCTCATGGAGACCTGCTACCAGATGAACCAACAGATGGAGACAGGTCTGAGCCCTGAGATTGCACATTTCAACATGTACCCTCGGGCAGATCATAAAGATGTGGAGGTCAAG
Seq C2 exon
CCAGCTGACAGGCACAACCTGCTGCGGCCAGAGACGGTGGAAAGCCTATTCTATCTGTACCGTGTCACAAGGGACCGCAAGTACCAGGACTGGGGCTGGGAAATCCTGCAGAGCTTCAATAAGTACACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036646-'18-20,'18-18,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.114
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=FE(9.1=100)
A:
PF0153215=Glyco_hydro_47=FE(14.8=100)
C2:
PF0153215=Glyco_hydro_47=FE(9.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGAAGACTATGTTAAAGCCA
R:
CGTGTGTACTTATTGAAGCTCTGC
Band lengths:
250-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: