DreEX6011227 @ danRer10
Exon Skipping
Gene
ENSDARG00000076592 | man1b1b
Description
mannosidase, alpha, class 1B, member 1b [Source:ZFIN;Acc:ZDB-GENE-070705-482]
Coordinates
chr5:28585765-28586382:-
Coord C1 exon
chr5:28586262-28586382
Coord A exon
chr5:28585984-28586178
Coord C2 exon
chr5:28585765-28585896
Length
195 bp
Sequences
Splice sites
3' ss Seq
CCATCATCTCTCTCTTTCAGGAC
3' ss Score
13.42
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATTGCTGGAGGACTATCTGCAGGCTGTGGAAGGAGTGAAGAAGAACCTGCTGAAGAAATCGACACCTCTTGGCCTTACATTTGTAGGAGAGTTGTCCCATGGACACTTCAGTCCCAAAATG
Seq A exon
GACCATTTGGTATGTTTCCTGCCTGGCACGTTGGCACTGGGGGTGCATTACGGCCTTCCCGCTGATCATATGGAGCTTGCGAAACAGCTGATAGAGACCTGCTACCAGATGTATGCACAGATGGAGACCGGTCTGAGTCCAGAAATAGCCCATTTCAACATGCACGATGGTAGCACACAGGATGTAGATGTGAAG
Seq C2 exon
ATTGCGGACCGCCACAATCTTCTGCGTCCAGAAACCGTGGAGAGCCTCTTCTACCTGTACAGATTGACCAGGGATAAGAAGTACCAGCAGTGGGGCTGGGAGATCCTGCAGAACTTTAACAAGTACACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076592-'12-17,'12-16,13-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=FE(9.1=100)
A:
PF0153215=Glyco_hydro_47=FE(14.6=100)
C2:
PF0153215=Glyco_hydro_47=FE(10.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGACTATCTGCAGGCT
R:
TGTGTACTTGTTAAAGTTCTGCAGGA
Band lengths:
246-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]