GgaEX1034692 @ galGal4
Exon Skipping
Gene
ENSGALG00000009079 | MAN1B1
Description
mannosidase, alpha, class 1B, member 1 [Source:HGNC Symbol;Acc:HGNC:6823]
Coordinates
chr17:334979-338024:-
Coord C1 exon
chr17:337904-338024
Coord A exon
chr17:335417-335614
Coord C2 exon
chr17:334979-335110
Length
198 bp
Sequences
Splice sites
3' ss Seq
AGAGCTGTCTTGTCCTACAGGAT
3' ss Score
9.05
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACTGTTGGAGGACTATATGAAAGCCATAGAAGGCGTGAAAAAGCATCTTCTTCAGAGATCACAACCCAAGAAGCTTACCTTTGTAGGAGAGCTTGCTCATGGCCATTTCAGTGCCAAGATG
Seq A exon
GATCACTTGGTTTGTTTTCTGCCTGGGACTTTGGCTCTGGGAGCTCACAATGGATTGACTGCTGATCATATGAAGCTGGCCGAAGCCCTGATAGAAACATGTTACCAGATGTATGCACAAGTAGAGACAGGCCTGAGTCCAGAGATTGTGCACTTCAATCTCCATGCACAAAAGGGCCACAAAGATGTAGAAATCAAG
Seq C2 exon
CCTGCAGACAGGCACAACTTACTGCGACCAGAAACTGTGGAAAGCCTTTTTTATATGTACAGATTCACCGGAGATAAGAAATACCAAGACTGGGGCTGGGAAATCTTGCAGAACTTCAATAAATACACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009079-'24-24,'24-23,25-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=FE(9.1=100)
A:
PF0153215=Glyco_hydro_47=FE(14.8=100)
C2:
PF0153215=Glyco_hydro_47=FE(9.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGAGGACTATATGAAAGCCA
R:
CCGTGTGTATTTATTGAAGTTCTGCA
Band lengths:
251-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]