RnoEX6015826 @ rn6
Exon Skipping
Gene
ENSRNOG00000012559 | Man1b1
Description
mannosidase, alpha, class 1B, member 1 [Source:RGD Symbol;Acc:1563595]
Coordinates
chr3:2565425-2566453:+
Coord C1 exon
chr3:2565425-2565545
Coord A exon
chr3:2566041-2566238
Coord C2 exon
chr3:2566322-2566453
Length
198 bp
Sequences
Splice sites
3' ss Seq
AGGAGATAATTTGTTTCCAGGAC
3' ss Score
3.32
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
Exon sequences
Seq C1 exon
GTTGCTGGAAGACTATGTTAGAGCCATCGAGGGGATCAAAGCTCATCTGCTTCGACAGTCTCAGCCCAGAAAGCTCACCTTCGTGGGAGAGCTTGCCCATGGCCGCTTCAGTGCCAAGATG
Seq A exon
GACCACTTGGTGTGCTTCCTGCCAGGGACGCTGGCCTTGGGCGTCCACCATGGCCTACCGGCTGACCACATGGATCTGGCTCGGGCACTCATGGAGACCTGCTACCAGATGAACCAACAGATGGAGACAGGTCTGAGCCCTGAGATTGCACATTTCAACATGTACCCTCGAGCAGATCATAAAGACGTGGAGGTCAAG
Seq C2 exon
CCGGCTGATAGGCACAACCTGCTGCGGCCGGAGACCGTGGAAAGCCTGTTCTATCTGTACCGCGTCACAAAAGACCGCAAGTACCAAGACTGGGGCTGGGAAATCCTGCAGAGCTTCAATAAGTACACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012559-'20-25,'20-23,22-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.114
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=FE(9.1=100)
A:
PF0153215=Glyco_hydro_47=FE(14.8=100)
C2:
PF0153215=Glyco_hydro_47=FE(9.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATGTTAGAGCCATCGAGGGG
R:
CCGTGTGTACTTATTGAAGCTCTG
Band lengths:
242-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]