BtaEX6047577 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046775 | MAN1B1
Description
mannosidase, alpha, class 1B, member 1 [Source:HGNC Symbol;Acc:HGNC:6823]
Coordinates
chr11:106125942-106126924:-
Coord C1 exon
chr11:106126804-106126924
Coord A exon
chr11:106126150-106126347
Coord C2 exon
chr11:106125942-106126073
Length
198 bp
Sequences
Splice sites
3' ss Seq
AGGTGACGCTGTGGTTTCAGGAC
3' ss Score
4.95
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCTGCTGGAAGACTACCTGGAAGCCGTGGACGGGATCAGGAAGCACCTGCTCGCCAGGTCTGAGCCCAGGAAGCTGACCTTCGTGGGGGAGCTCAACCACGGCCGCTTCAGCGCCAAGATG
Seq A exon
GACCACCTGGTGTGCTTCCTGCCTGGGACACTGGCTCTGGGTGCCCACCATGGCCTGCCTGCTGAGCACATGGAGCTGGCCCAGGCACTCATGGACACCTGCTACCAGATGTACCGTCAGATGGAGACGGGGCTGAGCCCCGAGACCGCACACTTCAACCTCCACCACACAAAGATCCTTAAGGACGTTCAGGTGAAG
Seq C2 exon
GCGGCCGACAGACATAACCTGCTGCGGCCCGAGACCGTGGAGAGCCTGTTCTACCTGTACCGCCTCACGGGCGACCGAAAGTACCAGGACTGGGGCTGGGAGATCCTGCACAGCTTCAACACCTACACGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046775-'16-28,'16-27,19-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=FE(9.1=100)
A:
PF0153215=Glyco_hydro_47=FE(14.8=100)
C2:
PF0153215=Glyco_hydro_47=FE(9.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGACTACCTGGAAGCCG
R:
GCGTGTAGGTGTTGAAGCTGT
Band lengths:
246-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]