MmuEX6100204 @ mm10
Exon Skipping
Gene
ENSMUSG00000039678 | Tbc1d13
Description
TBC1 domain family, member 13 [Source:MGI Symbol;Acc:MGI:2385326]
Coordinates
chr2:30134797-30140557:+
Coord C1 exon
chr2:30134797-30134870
Coord A exon
chr2:30137282-30137381
Coord C2 exon
chr2:30140475-30140557
Length
100 bp
Sequences
Splice sites
3' ss Seq
TCTGCGTGTCTCTCCTGCAGGGG
3' ss Score
12.16
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GATTGCAGATTTCCAGGATGTCCTGAAGGAGCCCTCCATTGTGTTGGAAAAGCTTCGAGAACTCAGTTTTAGTG
Seq A exon
GGGGCTCTATTCGCAGTTCCTGAGAGAGATGATTATCCAGCCTGGCATTGCCAAGGCCAACATGGGTGTATTCAGGGAGGATGTGACCTTTGAGGACCAT
Seq C2 exon
CCTCTGAACCCAAACCCTGACAGCAGGTGGAACACATATTTTAAGGACAACGAGGTGCTACTCCAGATTGACAAAGATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039678_MULTIEX1-5/5=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.071
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGCAGATTTCCAGGATGTCC
R:
ACATCTTTGTCAATCTGGAGTAGCA
Band lengths:
154-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types