HsaEX6063346 @ hg19
Exon Skipping
Gene
ENSG00000107021 | TBC1D13
Description
TBC1 domain family, member 13 [Source:HGNC Symbol;Acc:25571]
Coordinates
chr9:131553659-131554853:+
Coord C1 exon
chr9:131553659-131553720
Coord A exon
chr9:131553873-131553972
Coord C2 exon
chr9:131554771-131554853
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTCTCACTTGTCTCCTGCAGGGA
3' ss Score
10.84
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
ATTCTCTTGAACTACCTTCCCTTGGAGAGAGCCTCATGGACCTCCATCCTGGCCAAGCAGAG
Seq A exon
GGAGCTGTATGCCCAGTTCCTGAGGGAAATGATCATCCAGCCTGGCATTGCCAAGGCCAACATGGGTGTGTCCAGGGAGGATGTGACTTTTGAGGACCAT
Seq C2 exon
CCACTCAACCCCAACCCTGACAGCCGGTGGAACACGTACTTCAAGGACAACGAGGTGCTGCTGCAGATCGACAAAGATGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107021-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.137 C2=0.107
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(18.3=100)
A:
PF0056613=RabGAP-TBC=FE(30.3=100)
C2:
PF0056613=RabGAP-TBC=FE(24.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCTTGAACTACCTTCCCTTGG
R:
TCTTTGTCGATCTGCAGCAGC
Band lengths:
138-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)