GgaEX1000980 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BXI8]
Coordinates
chr17:5266483-5268236:+
Coord C1 exon
chr17:5266483-5266544
Coord A exon
chr17:5266775-5266874
Coord C2 exon
chr17:5268154-5268236
Length
100 bp
Sequences
Splice sites
3' ss Seq
GCTTCATTTCCCTCCCTAAGGGA
3' ss Score
6.8
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
ATCCTGCTGAACTACCTCCCCTTAGAGAGGGCCCTATGGAGCTCTTTGCTGAAGAAGCAGAG
Seq A exon
GGATCTGTATTCCCAGTTCCTAAAAGAGATGATTATTCAGCCTGGGATCGCCAAAGCCAACCTCGGCGTCTCAAGGGAAGATGTCACCTTAGAGGATCAC
Seq C2 exon
CCCCTCAATCCAAACCCAGACAGCCGGTGGAATACTTACTTCAAAGACAACGAGGTGCTCCTCCAGATAGACAAAGACGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004645_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.147 C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGCTGAACTACCTCCCC
R:
CGTCTTTGTCTATCTGGAGGAGC
Band lengths:
141-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]