GgaEX1000980 @ galGal3
Exon Skipping
Gene
ENSGALG00000004645 | TBC1D13
Description
NA
Coordinates
chr17:5894665-5896418:+
Coord C1 exon
chr17:5894665-5894726
Coord A exon
chr17:5894957-5895056
Coord C2 exon
chr17:5896336-5896418
Length
100 bp
Sequences
Splice sites
3' ss Seq
GCTTCATTTCCCTCCCTAAGGGA
3' ss Score
6.8
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
ATCCTGCTGAACTACCTCCCCTTAGAGAGGGCCCTATGGAGCTCTTTGCTGAAGAAGCAGAG
Seq A exon
GGATCTGTATTCCCAGTTCCTAAAAGAGATGATTATTCAGCCTGGGATCGCCAAAGCCAACCTCGGCGTCTCAAGGGAAGATGTCACCTTAGAGGATCAC
Seq C2 exon
CCCCTCAATCCAAACCCAGACAGCCGGTGGAATACTTACTTCAAAGACAACGAGGTGCTCCTCCAGATAGACAAAGACGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004645-'4-6,'4-4,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.147 C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGCTGAACTACCTCCCC
R:
CGTCTTTGTCTATCTGGAGGAGC
Band lengths:
141-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]