RnoEX6016272 @ rn6
Exon Skipping
Gene
ENSRNOG00000015970 | Tbc1d13
Description
TBC1 domain family, member 13 [Source:RGD Symbol;Acc:1591937]
Coordinates
chr3:8704997-8707398:+
Coord C1 exon
chr3:8704997-8705058
Coord A exon
chr3:8705173-8705272
Coord C2 exon
chr3:8707316-8707398
Length
100 bp
Sequences
Splice sites
3' ss Seq
TCTGCTCGTCTCTCTTGCAGGGG
3' ss Score
11.57
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
ATCCTCCTGAACTACCTCCCTTTGGAGAGAGACTCGTGGGATTCCATCCTGGCCAAGCAGAG
Seq A exon
GGGGCTTTATTCACAGTTCCTGAGAGAGATGATTATTCAGCCTGGCATTGCGAAGGCCAACATGGGTGTGTCCAGAGAGGACGTGACCTTTGAGGACCAT
Seq C2 exon
CCCCTGAACCCAAACCCTGACAGCAGGTGGAACACGTATTTTAAGGACAACGAGGTGCTATTGCAGATTGACAAAGATGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015970-'9-5,'9-4,10-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.147 C2=0.107
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCTGAACTACCTCCCTT
R:
ACATCTTTGTCAATCTGCAATAGC
Band lengths:
141-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]