MmuEX6100516 @ mm9
Exon Skipping
Gene
ENSMUSG00000002546 | Golga2
Description
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
Coordinates
chr2:32160479-32161213:+
Coord C1 exon
chr2:32160479-32160554
Coord A exon
chr2:32160730-32160815
Coord C2 exon
chr2:32160995-32161213
Length
86 bp
Sequences
Splice sites
3' ss Seq
AACCTACTGTCTGCCCCCAGGAG
3' ss Score
10.65
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GAGCGCCTAAAAGCTACCAGCCAGGAGAACCAACAGCTCCAAGCCCAGCTGAGCCTCTTGGTCCTCCCTGGGGAAG
Seq A exon
GAGATGTGGACCAGGAGGAAGAAGATGAGGAGGTTCCTCAGTCGAGTCTGGCCATCCCAGAAGACCTAGACAGTAGAGAGGCCATG
Seq C2 exon
GTGGCATTCTTTAATGCCGCTATAGCCAGAGCAGAGGAAGAACAGGCCCGACTACGTGTGCAGCTGAAAGAGCAGAAGGCACGTTGCCGGAGTTTGTCTCACTTGGCAGCCCCAGTCCAAAGCAAGCTTGAAAAGGAGGCAGTGGTCCCCAGGAATGTGGATGACTCTGCATCTGAGGAGAGCAATCAGGCCCTACATGTAGCCATGGAGAAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002546-'30-34,'30-32,31-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=0.724 C2=0.274
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(4.0=100)
A:
PF150701=GOLGA2L5=FE(4.5=100)
C2:
PF150701=GOLGA2L5=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTAAAAGCTACCAGCCAGG
R:
GGCTGCCAAGTGAGACAAACT
Band lengths:
183-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: