BtaEX6046381 @ bosTau6
Exon Skipping
Description
Bos taurus golgin A2 (GOLGA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192195]
Coordinates
chr11:98880264-98881160:-
Coord C1 exon
chr11:98881085-98881160
Coord A exon
chr11:98880744-98880832
Coord C2 exon
chr11:98880264-98880482
Length
89 bp
Sequences
Splice sites
3' ss Seq
CCCCTATCTGTCCCCAACAGGAG
3' ss Score
9.98
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GAGCGCCTGGAAGCTGCCAACCAGCAGAACCAGCAGCTTCAGGCCCAGCTGACCCTCATGGCTGTGCCTGGGGAAG
Seq A exon
GAGATGGACTGGAGAGTGAGGAGCAGGATGAGGAGGCTCCGAGGCCTAAGCTGAGCGTGCCGGAGGAGCTGGAGAGCCGAGAGGCCCTG
Seq C2 exon
GTGGAATTTTTCCACTCGGCCTTGGCCAGTGCTGAGGATGAGCAGGCCCGGCTACGCAGGCAGCTGAAGGAGCAGAAGCTACACTGCCAGCGCCTCTGTCACCTGGCGGCCACAGCCCAGGATGGGGTGGAAAAAGAAGCCCCCGCCCCCAGGACTGGGGGAGACAGTGTGCCCGCGGAGGCCCACCAGGCCCTCCAGGTGGCCATGGACAAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011317-'26-26,'26-25,28-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.923 A=0.767 C2=0.493
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(4.0=100)
A:
PF150701=GOLGA2L5=FE(4.7=100)
C2:
PF150701=GOLGA2L5=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGACCCTCATGGCTGT
R:
GGGCTTCTTTTTCCACCCCAT
Band lengths:
172-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]