RnoEX6016429 @ rn6
Exon Skipping
Gene
ENSRNOG00000011884 | Golga2
Description
golgin A2 [Source:RGD Symbol;Acc:620282]
Coordinates
chr3:11334561-11335334:+
Coord C1 exon
chr3:11334561-11334636
Coord A exon
chr3:11334835-11334920
Coord C2 exon
chr3:11335116-11335334
Length
86 bp
Sequences
Splice sites
3' ss Seq
CAGCAACTGTCTGCCCCCAGGAG
3' ss Score
8.11
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GAGCGCCTAAAAGCTAGCAGCCAGGAGAACCAACAGCTCCAAGCCCAGCTGAGCCTCTTGGTCCTCCCTGGGGAAG
Seq A exon
GAGATATGGACCAGGAGGAGCAAGACGAGGAGGTTCCTCAGCCCAGTCTGACCATCCCAGAAGACCTTGTCAGTAGAGAGGCTATG
Seq C2 exon
GTGGCCTTCTGCAATGCAGCGATAGCCAGAGCTGAGGAAGAGCAGGCCCGACTCCGCGTGCAGCTGAGAGAGCAGAAGGCACGTTGCCGGAGCTTGGCTCACTTGGCAGCCCCAGTCCAAAGCAAGCTTGAAAAGGAGGCAGTGGTCCCCAGGGATATGGGTGACTCTGTATCTGAGGAGAGCAACCAGGCCCTACATGTAGCCATGGAGAAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011884-'32-38,'32-36,33-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.673 A=0.722 C2=0.274
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(4.0=100)
A:
PF150701=GOLGA2L5=FE(4.5=100)
C2:
PF150701=GOLGA2L5=FE(11.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACCAACAGCTCCAAGCC
R:
TCAAGCTTGCTTTGGACTGGG
Band lengths:
183-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]