MmuEX6100516 @ mm10
Exon Skipping
Gene
ENSMUSG00000002546 | Golga2
Description
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
Coordinates
chr2:32304959-32305693:+
Coord C1 exon
chr2:32304959-32305034
Coord A exon
chr2:32305210-32305295
Coord C2 exon
chr2:32305475-32305693
Length
86 bp
Sequences
Splice sites
3' ss Seq
AACCTACTGTCTGCCCCCAGGAG
3' ss Score
10.65
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GAGCGCCTAAAAGCTACCAGCCAGGAGAACCAACAGCTCCAAGCCCAGCTGAGCCTCTTGGTCCTCCCTGGGGAAG
Seq A exon
GAGATGTGGACCAGGAGGAAGAAGATGAGGAGGTTCCTCAGTCGAGTCTGGCCATCCCAGAAGACCTAGACAGTAGAGAGGCCATG
Seq C2 exon
GTGGCATTCTTTAATGCCGCTATAGCCAGAGCAGAGGAAGAACAGGCCCGACTACGTGTGCAGCTGAAAGAGCAGAAGGCACGTTGCCGGAGTTTGTCTCACTTGGCAGCCCCAGTCCAAAGCAAGCTTGAAAAGGAGGCAGTGGTCCCCAGGAATGTGGATGACTCTGCATCTGAGGAGAGCAATCAGGCCCTACATGTAGCCATGGAGAAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002546-'44-56,'44-46,48-56=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=0.724 C2=0.274
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(4.0=100)
A:
PF150701=GOLGA2L5=FE(4.5=100)
C2:
PF150701=GOLGA2L5=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTAAAAGCTACCAGCCAGG
R:
GGCTGCCAAGTGAGACAAACT
Band lengths:
183-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types