DreEX6008915 @ danRer10
Exon Skipping
Gene
ENSDARG00000063197 | golga2
Description
golgin A2 [Source:ZFIN;Acc:ZDB-GENE-081030-1]
Coordinates
chr5:1384174-1386616:-
Coord C1 exon
chr5:1386517-1386616
Coord A exon
chr5:1385984-1386072
Coord C2 exon
chr5:1384174-1384348
Length
89 bp
Sequences
Splice sites
3' ss Seq
CCCCCTGCTGATGTGTTCAGGTG
3' ss Score
8.47
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GAGAAGCTGAGCCGTCTGGTCCGAGACAACGAGGAGCTGAAAACGGAGGTGCAGGAGCTGCTGAACGGATCCATCATGAACACATCACACCGAGATGAAG
Seq A exon
GTGATGGGCTGGAGAGTCAGACACTCCCTGAGAGCTTCCAGAAATCACAGATTGCCATACCTGAAGACTTTGAGAGCAGAGAAGAGATG
Seq C2 exon
AAGGAGTTTATCCACTCTGTGTTGTCGCGTGTGGAGGCGGAGCGAGATGAAATGAGCCGCCGGTTGGAGGAGGAGAGGAGAATTCATCAAGACACCCGGCAGCAGCTGACGGCCCTGAGCCACGATCACCATCATCATCATCATCACGAACCTCACAGCACGTGTGCAGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063197-'31-29,'31-28,32-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.735 A=0.833 C2=0.915
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(5.0=100)
A:
PF150701=GOLGA2L5=FE(4.4=100)
C2:
PF150701=GOLGA2L5=FE(8.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGCTGAAAACGGAGGTG
R:
CTGCCGGGTGTCTTGATGAAT
Band lengths:
172-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]