MmuEX6100641 @ mm9
Exon Skipping
Gene
ENSMUSG00000026797 | Stxbp1
Description
syntaxin binding protein 1 [Source:MGI Symbol;Acc:MGI:107363]
Coordinates
chr2:32657340-32661669:-
Coord C1 exon
chr2:32661589-32661669
Coord A exon
chr2:32658274-32658412
Coord C2 exon
chr2:32657340-32657449
Length
139 bp
Sequences
Splice sites
3' ss Seq
GCAAGGTGTGTTTTCTACAGGAC
3' ss Score
7.18
5' ss Seq
ACGGTAGGA
5' ss Score
8.6
Exon sequences
Seq C1 exon
TATTCGACTCACCTGCACCTTGCTGAAGACTGCATGAAGCATTACCAAGGCACTGTAGACAAACTCTGCCGCGTGGAGCAG
Seq A exon
GACCTGGCAATGGGCACAGATGCTGAGGGGGAAAAAATCAAGGACCCCATGAGAGCCATTGTCCCCATCCTGCTGGATGCGAACGTCAGCACTTACGACAAAATCCGTATCATCCTTCTCTACATCTTCCTGAAGAACG
Seq C2 exon
GTATCACTGAGGAGAACCTAAACAAACTCATCCAGCACGCTCAGATACCCCCAGAGGACAGCGAGATCATCACCAACATGGCTCACCTCGGCGTGCCCATCGTCACGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026797-'15-15,'15-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.085 C2=0.135
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(4.7=100),PF140711=YlbD_coat=FE(26.0=100)
A:
PF0099518=Sec1=FE(11.0=100),PF140711=YlbD_coat=PD(1.0=2.1)
C2:
PF0099518=Sec1=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCGACTCACCTGCACCTTG
R:
ATCCGTGACGATGGGCACG
Band lengths:
190-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: