DreEX6083582 @ danRer10
Exon Skipping
Gene
ENSDARG00000001994 | stxbp1a
Description
syntaxin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050626-106]
Coordinates
chr21:13805770-13809719:+
Coord C1 exon
chr21:13805770-13805850
Coord A exon
chr21:13809380-13809518
Coord C2 exon
chr21:13809610-13809719
Length
139 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCCAACACCTGGCAGGAT
3' ss Score
5.59
5' ss Seq
ACGGTTAGA
5' ss Score
4.22
Exon sequences
Seq C1 exon
TACTCAACTCATCTGCAGCTGGCTGAGGATTGCATGAAGCACTACCAGGGAACTGTGGACAAACTATGCCGTGTTGAGCAG
Seq A exon
GATCTCGCAATGGGAACAGATGCTGAGGGTGAGAAGATTAAAGACCCCATGAGGGCCATCGTGCCAATCTTGCTGGATGCCAATGTCACCACCTATGACAAGATCCGCATCATCCTGCTCTACATTTTCCTCAAGAACG
Seq C2 exon
GGATCACGGAGGAAAACCTTAACAAGCTGATCCAGCATGCTCAGATCCCTCCTGAGGACAGTGAGATCATCACCAATATGGCTCACCTGGGCGTCCCCATCATCACAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001994-'13-17,'13-16,14-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.085 C2=0.135
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(4.7=100),PF140711=YlbD_coat=FE(23.0=100)
A:
PF0099518=Sec1=FE(8.3=100),PF140711=YlbD_coat=PD(0.9=2.1)
C2:
PF0099518=Sec1=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAACTCATCTGCAGCTGGC
R:
GTCTGTGATGATGGGGACGC
Band lengths:
189-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]