RnoEX0087355 @ rn6
Exon Skipping
Gene
ENSRNOG00000015420 | Stxbp1
Description
syntaxin binding protein 1 [Source:RGD Symbol;Acc:3785]
Coordinates
chr3:11836343-11840247:-
Coord C1 exon
chr3:11840167-11840247
Coord A exon
chr3:11837387-11837525
Coord C2 exon
chr3:11836343-11836452
Length
139 bp
Sequences
Splice sites
3' ss Seq
GCAAGGTGTGTTTTCTGCAGGAC
3' ss Score
7.17
5' ss Seq
ACGGTAGGA
5' ss Score
8.6
Exon sequences
Seq C1 exon
TATTCGACTCACCTGCACCTTGCTGAAGACTGTATGAAGCATTACCAAGGCACCGTAGACAAACTCTGCCGCGTGGAGCAG
Seq A exon
GACCTGGCGATGGGCACAGATGCTGAGGGGGAAAAAATCAAGGACCCCATGAGAGCCATTGTCCCCATCCTGCTGGATGCAAATGTCAGCACTTATGACAAAATTCGCATCATCCTTCTCTACATCTTCCTGAAGAACG
Seq C2 exon
GTATCACTGAAGAAAACCTAAACAAACTCATCCAGCACGCCCAGATCCCCCCAGAAGACAGTGAGATCATCACCAACATGGCTCACCTCGGGGTGCCCATCGTCACGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015420-'29-30,'29-29,32-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.085 C2=0.135
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(4.7=100),PF140711=YlbD_coat=FE(26.0=100)
A:
PF0099518=Sec1=FE(8.3=100),PF140711=YlbD_coat=PD(1.0=2.1)
C2:
PF0099518=Sec1=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCGACTCACCTGCACCTTG
R:
ATCCGTGACGATGGGCAC
Band lengths:
190-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]