GgaEX1056305 @ galGal3
Exon Skipping
Gene
ENSGALG00000007196 | STXBP1
Description
NA
Coordinates
chr17:2830326-2830849:+
Coord C1 exon
chr17:2830326-2830406
Coord A exon
chr17:2830496-2830634
Coord C2 exon
chr17:2830740-2830849
Length
139 bp
Sequences
Splice sites
3' ss Seq
GATGGGCGTGTGCTCTGCAGGAC
3' ss Score
8.21
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
TACTCCACTCACCTGCACCTGGCCGAGGACTGCATGAAGCACTACCAGGGCACGGTGGACAAGCTGTGCCGAGTGGAACAG
Seq A exon
GACCTGGCCATGGGCACCGATGCTGAAGGCGAGAAGATCAAAGACCCCATGAGGGCCATTGTCCCCATCCTGCTGGATGGGAACGTCAGCACCTACGACAAGATCCGCATCATCCTGCTGTACATCTTCCTGAAGAACG
Seq C2 exon
GTATCACCGAGGAGAACCTGAACAAGCTGATCCAGCACGCCCAGATCCCAGCCGAGGACAGCGAGATCATCACCAACATGGCCCACCTCGGGGTGCCCATCATCACAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007196-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.085 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(5.7=100),PF140711=YlbD_coat=FE(26.0=100)
A:
PF0099518=Sec1=FE(10.0=100),PF140711=YlbD_coat=PD(1.0=2.1)
C2:
PF0099518=Sec1=FE(7.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCCACTCACCTGCACCTG
R:
GAGGTGGGCCATGTTGGTGAT
Band lengths:
170-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]