BtaEX6046256 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003525 | STXBP1
Description
Bos taurus syntaxin binding protein 1 (STXBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_174619]
Coordinates
chr11:98376418-98379500:+
Coord C1 exon
chr11:98376418-98376498
Coord A exon
chr11:98378386-98378524
Coord C2 exon
chr11:98379391-98379500
Length
139 bp
Sequences
Splice sites
3' ss Seq
ACACGGTGTGTTTTCTGCAGGAC
3' ss Score
10.67
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
Exon sequences
Seq C1 exon
TATTCGACCCACCTGCACCTCGCCGAGGACTGTATGAAGCATTACCAAGGCACTGTGGATAAGCTCTGCCGGGTGGAACAG
Seq A exon
GACCTGGCCATGGGCACGGATGCTGAAGGGGAGAAGATCAAGGACCCCATGAGAGCCATCGTCCCCATTCTGCTGGATGCAAATGTCAGCACTTATGACAAAATCCGCATCATCCTTCTCTACATCTTTTTGAAGAATG
Seq C2 exon
GCATCACTGAGGAAAACCTGAACAAACTGATCCAGCACGCTCAGATCCCGCCGGAGGACAGTGAGATCATCACGAACATGGCACACCTCGGGGTGCCCATCGTCACAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003525-'19-27,'19-26,23-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.085 C2=0.135
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(4.7=100),PF140711=YlbD_coat=FE(26.0=100)
A:
PF0099518=Sec1=FE(8.3=100),PF140711=YlbD_coat=PD(1.0=2.1)
C2:
PF0099518=Sec1=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTCGACCCACCTGCACCTC
R:
GTCTGTGACGATGGGCAC
Band lengths:
191-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]