MmuEX6100674 @ mm10
Exon Skipping
Gene
ENSMUSG00000026791 | Slc2a8
Description
solute carrier family 2, (facilitated glucose transporter), member 8 [Source:MGI Symbol;Acc:MGI:1860103]
Coordinates
chr2:32972990-32975484:-
Coord C1 exon
chr2:32975314-32975484
Coord A exon
chr2:32974838-32974983
Coord C2 exon
chr2:32972990-32973732
Length
146 bp
Sequences
Splice sites
3' ss Seq
ACTCTGCCTTGTTCCCACAGGCT
3' ss Score
11.92
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTGTGATCATGGTGTTCAGTATGAGTGCCTTTGGTACCTACTTCAAACTGACCCAGAGCCTCCCCAGCAACTCCTCCCACGTAGGCCTGGTGCCCATCGCGGCGGAGCCTGTGGATGTCCAAGTGGGACTGGCCTGGCTGGCTGTAGGCAGCATGTGCCTCTTCATTGCTG
Seq A exon
GCTTTGCGGTGGGCTGGGGACCCATCCCCTGGCTCCTCATGTCAGAGATCTTCCCTCTGCATGTCAAGGGTGTGGCTACCGGCATCTGTGTCCTCACCAACTGGTTCATGGCCTTTCTAGTGACCAAAGAGTTCAGCAGCGTCATG
Seq C2 exon
GAGATGCTCAGACCCTACGGTGCCTTCTGGCTCACCGCTGCCTTCTGCGCTCTCAGTGTCCTATTCACACTGACCGTTGTCCCTGAGACTAAAGGCAGGACTCTGGAACAAGTCACAGCCCATTTCGAGGGACGATGACAGACCCTTTCTGTGCCTGGGAGCCCCGAGCTGAGCTGCCTTTGGGTTTCAGAAGGAGTGGAGTGGCCTGTAACTAAGCCACACCTCAGTTTGAGCCTGGAGGCCCCCTGACTCCTCACCTCAGGGCCCTCTTTGCCCAGATCTCAACCCAGATTCCCACCGTGAGGCCCACCAGACTCTGAGTGCGGTCTCTGCAGCCTGCTTCACACACAGGACATCTGAGGAGCTGTGCATCCTCACCTGACCCAGGTGTCTCCTTCTTAAGACTGAGGCAGCTGAAGGGACCTGAGGGCTCCTGGCTCCCGTTTCCTGGCTGGGGTGCCCGGTCCTAAGCAGCCGCCTGTACCTCACTTGACTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026791-'14-19,'14-15,15-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(12.8=100)
A:
PF0008319=Sugar_tr=FE(10.8=100)
C2:
PF0008319=Sugar_tr=PD(9.2=89.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATGTGCCTCTTCATTGCT
R:
GGTGTGGCTTAGTTACAGGCC
Band lengths:
245-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types