HsaEX0059312 @ hg38
Exon Skipping
Gene
ENSG00000136856 | SLC2A8
Description
solute carrier family 2 member 8 [Source:HGNC Symbol;Acc:HGNC:13812]
Coordinates
chr9:127404818-127407855:+
Coord C1 exon
chr9:127404818-127404991
Coord A exon
chr9:127405420-127405565
Coord C2 exon
chr9:127407112-127407855
Length
146 bp
Sequences
Splice sites
3' ss Seq
TGCCTGTCTCGCTCCCACAGGCT
3' ss Score
12.41
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTGTGGTCATGGTGTTCAGCACGAGTGCCTTCGGCGCCTACTTCAAGCTGACCCAGGGTGGCCCTGGCAACTCCTCGCACGTGGCCATCTCGGCGCCTGTCTCTGCACAGCCTGTTGATGCCAGCGTGGGGCTGGCCTGGCTGGCCGTGGGCAGCATGTGCCTCTTCATCGCCG
Seq A exon
GCTTTGCGGTGGGCTGGGGGCCCATCCCCTGGCTCCTCATGTCAGAGATCTTCCCTCTGCATGTCAAGGGCGTGGCGACAGGCATCTGCGTCCTCACCAACTGGCTCATGGCCTTTCTCGTGACCAAGGAGTTCAGCAGCCTCATG
Seq C2 exon
GAGGTCCTCAGGCCCTATGGAGCCTTCTGGCTTGCCTCCGCTTTCTGCATCTTCAGTGTCCTTTTCACTTTGTTCTGTGTCCCTGAAACTAAAGGAAAGACTCTGGAACAAATCACAGCCCATTTTGAGGGGCGATGACAGCCACTCACTAGGGGATGGAGCAAGCCTGTGACTCCAAGCTGGGCCCAAGCCCAGAGCCCCTGCCTGCCCCAGGGGAGCCAGAATCCAGCCCCTTGGAGCCTTGGTCTGCAGGGTCCCTCCTTCCTGTCATGCTCCCTCCAGCCCATGACCCGGGGCTAGGAGGCTCACTGCCTCCTGTTCCAGCTCCTGCTGCTGCTCTGAGGACTCAGGAACACCTTCGAGCTTTGCAGACCTGCGGTCAGCCCTCCATGCGCAAGACTAAAGCAGCGGAAGAGGAGGTGGGCCTCTAGGATCTTTGTCTTCTGGCTGGAGGTGCTTTTGGAGGTTGGGTGCTGGGCATTCAGTCGCTCCTCTCACGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136856-'15-25,'15-23,21-25=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(27.5=100)
A:
PF0008319=Sugar_tr=FE(22.7=100)
C2:
PF0008319=Sugar_tr=PD(19.4=89.1)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCTGCACAGCCTGTTGAT
R:
GAGTCACAGGCTTGCTCCATC
Band lengths:
251-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development