GgaEX6015676 @ galGal3
Exon Skipping
Gene
ENSGALG00000000853 | F1NDA6_CHICK
Description
NA
Coordinates
chr17:11120861-11122782:+
Coord C1 exon
chr17:11120861-11121034
Coord A exon
chr17:11122125-11122270
Coord C2 exon
chr17:11122432-11122782
Length
146 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTTTTGTACTGATAGGTT
3' ss Score
9.02
5' ss Seq
ATAGTAAGC
5' ss Score
5.26
Exon sequences
Seq C1 exon
GGATGATCATGGCTCTCAGTACTGCGCTGTTTGGGTTTTACTTTAAAATGGTCCTTCCAAATGGGAACAACTCATCAAATACTGATCTGTGGTTCACTTTAAATTCAGTAACTCCAGGAACAGATACTAGACTATCCTGGCTTGCAGTGGTAAGCCTAGGACTCTTTGTTGCTG
Seq A exon
GTTTTGCCCTTGGCTGGGGTCCAGTTCCATGGCTGGTAATGTCTGAAATCTTCCCACTTAAAGCAAGGGGTGTATCAAGCAGTGCCTGTGTGTTAACAAACTGGGTTATGGCCTTTCTGGTGACCAAGGAATTTCACGATTTTATA
Seq C2 exon
GGTTTCTTAACATCCTATGGGACATTCTGGCTCTTCTCTGCCTTCTGCTGCCTCAGCGTGACTTTTGCAGCCTTTTATGTTCCTGAAACAAAAGGGCGGACCCTGGAACAGATTGAGGCGTACTTCAGGAAATCTTAAATCTCAGACTTTTGCTGATATGAAACCTTTACAACATTATTGGTGGTGCTATTGCTAAAACTAACTGTAGCATGTGGTAGAGAGTCACACAACTTCCTATACAATTGTTTTAATGAATTTTGTAAAATCTACCTTTTTTTCCCCTCCCCCAAAAATCTATAGGAATTTGCATGCACTTGATTATCACTGCATACTCTCTGTAGTATATGTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000853-'8-12,'8-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(12.8=100)
A:
PF0008319=Sugar_tr=FE(10.6=100)
C2:
PF0008319=Sugar_tr=PD(9.1=89.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACTGCGCTGTTTGGGTTT
R:
GTCCGCCCTTTTGTTTCAGGA
Band lengths:
258-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]