DreEX6014364 @ danRer10
Exon Skipping
Gene
ENSDARG00000104278 | slc2a8
Description
solute carrier family 2 (facilitated glucose transporter), member 8 [Source:ZFIN;Acc:ZDB-GENE-030829-25]
Coordinates
chr5:65302712-65307489:+
Coord C1 exon
chr5:65302712-65302888
Coord A exon
chr5:65303066-65303211
Coord C2 exon
chr5:65307071-65307489
Length
146 bp
Sequences
Splice sites
3' ss Seq
CATAAGCATGTGTTTACCAGGAT
3' ss Score
3.85
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTGTCGTCATGTGTATTAGCGAAGCAGTGTTTGGAGTGTACTTTAAGCTGACTGTGATGAAGCCCAATAACTCCTCATTGACCAGTGTGCTAACGGACACCCATGGTCTTCTGGAAGATCAGCCCTCTGCAGACCTGGCCTGGTTGGCTGTGGGAAGCATGGGCTTTTTCATTGCAG
Seq A exon
GATTTGCTATTGGTTGGGGTCCTACTCCGTGGCTGGTGATGTCCGAGATCTTCCCCACGCGGGTGAGGGGATTAGGCAGTGCTCTGTGTGTGCTTACTAACTGGACCTGTGCCTTCATTGTCACCAAAACCTTCCAGAACCTCATG
Seq C2 exon
GATGCTCTGAGCAGCGCAGGAACATTTTGGATGTTCTCGGCACTGTGTGCTTCTAATGTCGTCTTCACGGCTTTCTTTGTCCCCGAGACCAAAGGCAAAACTCTGGAGGAGATTCAAGCTGGTTTTAAAGGGACTCGCATGCGCTAGATGACTCTTTTCCCTCAGCGCCATAACCAAAATATTGAACAAAACATCTTCGACATCTTGAAGAATCTTGTAATGTTTTAGAATATTGCAATTGTTTACAGAGAAAATATCTATATTTTGTCTACTTTTTCTGTCATCTTAATGTGATTTATCTTTAAATTAAGAGTTTTTAACATTACTTTTAAACACATTGTTACTTTTGGTACACAAACGTCATAAATTAGTGCCTCATTTTAACTTGTTTGCAGGTCATATGAATATAAATACACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104278-'8-12,'8-11,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(13.0=100)
A:
PF0008319=Sugar_tr=FE(10.5=100)
C2:
PF0008319=Sugar_tr=PD(9.0=83.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACCCATGGTCTTCTGGA
R:
GGTTATGGCGCTGAGGGAAAA
Band lengths:
258-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]