RnoEX6016501 @ rn6
Exon Skipping
Gene
ENSRNOG00000022274 | Slc2a8
Description
solute carrier family 2 member 8 [Source:RGD Symbol;Acc:620611]
Coordinates
chr3:12020229-12022696:-
Coord C1 exon
chr3:12022523-12022696
Coord A exon
chr3:12022052-12022197
Coord C2 exon
chr3:12020229-12020987
Length
146 bp
Sequences
Splice sites
3' ss Seq
ACACTGCCTTGTCCCCACAGGTT
3' ss Score
12.77
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTGTGATCATGGTTTTCAGCATGAGCGCCTTTGGTACCTACTTCAAACTGACCCAGAGTGGCCCCAGCAACTCCTCCCATGTAGGCCTCCTGGTGCCCATCTCCGCAGAGCCTGCTGATGTTCACCTGGGGCTGGCCTGGCTGGCTGTAGGCAGCATGTGCCTCTTCATCGCTG
Seq A exon
GTTTTGCAGTAGGCTGGGGACCCATCCCCTGGCTCCTCATGTCAGAGATCTTCCCTCTGCACATCAAGGGTGTGGCTACCGGCGTCTGTGTCCTCACCAACTGGTTCATGGCCTTTCTGGTGACCAAAGAGTTTAACAGCATCATG
Seq C2 exon
GAGATCCTCAGACCCTACGGCGCCTTCTGGCTCACCGCTGCCTTCTGTATCCTCAGCGTCCTTTTCACGCTCACCTTTGTCCCTGAGACTAAAGGCAGGACTCTGGAACAAATCACAGCCCATTTCGAGGGACGGTGACGGACCCTTTCTGTGACTGGCAGCCCTGAGCTGAGCTGGCTTCGGGTTTCAAAAGGAGTGGAGTGGCCTCAGTGACCACAGTTTGAGCCCAGGGGCCCCCTGACTCCTCAGATCTCCGGGCCAGCTTTGTCCAGATCTCAACCCAGATCCACACCATGAGCTTCACCAGATTCTGAGGCTCTGCAGCCTGCTGCACACACAACACATCTGCGGAGCCATGCAGTCTCGCCTAACCCACGGGTCTCCTTCCTAAGACTAAAGCAACTGACGAGACTGCGGGCTCCTGGCTCTAGTGCTCTGGCTGGGCATCTTTGGGGTGCTTGGTCCTAAGCAACTGCCCATACCTCACTTGACTGGGGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022274-'9-21,'9-17,10-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(13.0=100)
A:
PF0008319=Sugar_tr=FE(10.7=100)
C2:
PF0008319=Sugar_tr=PD(9.2=89.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCGCCTTTGGTACCTACT
R:
GTCTCAGGGACAAAGGTGAGC
Band lengths:
242-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]