MmuEX6100744 @ mm9
Exon Skipping
Gene
ENSMUSG00000026870 | D730039F16Rik
Description
RIKEN cDNA D730039F16 gene [Source:MGI Symbol;Acc:MGI:1925246]
Coordinates
chr2:34741391-34743691:+
Coord C1 exon
chr2:34741391-34741450
Coord A exon
chr2:34743272-34743317
Coord C2 exon
chr2:34743642-34743691
Length
46 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTCCCCTCTCTCTAGGTA
3' ss Score
12.97
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GGCCATCCTGGATAAGAAGATGGCTTCGTCTGTGAACATCTTGCCGAAGACCTCTTCTCT
Seq A exon
GTACTTTTGGAAAGGAGAAATAGAAGAAGGCATTGAGGTCTCACTG
Seq C2 exon
CTAATAAAGACAAAGACTTCCAAGGTCTCCCGGCTGTTTGCCTATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026870-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=FE(35.1=100)
A:
PF0309110=CutA1=FE(26.3=100)
C2:
PF0309110=CutA1=FE(15.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATCCTGGATAAGAAGATGG
R:
GGAGACCTTGGAAGTCTTTGTCT
Band lengths:
90-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: