DreEX6011888 @ danRer10
Exon Skipping
Gene
ENSDARG00000054288 | CUTA
Description
cutA divalent cation tolerance homolog (E. coli) [Source:HGNC Symbol;Acc:HGNC:21101]
Coordinates
chr5:33347890-33348477:-
Coord C1 exon
chr5:33348418-33348477
Coord A exon
chr5:33348089-33348134
Coord C2 exon
chr5:33347890-33347939
Length
46 bp
Sequences
Splice sites
3' ss Seq
TAACTTTTTATTAATTTCAGGTA
3' ss Score
8.99
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
AATCATCATGGAGAAAAGGCTGGCAGCATGTGTGAATATATTTCCTCGTACTGCCACTAT
Seq A exon
GTACTACTGGAAAGGTGAGATTAGGGATGCCACAGAAATACTACTG
Seq C2 exon
CTTGTGAGGACAAAAACATCTCTTGTGCAGAGACTTATGACTTATATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000054288-'3-6,'3-4,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=FE(19.6=100)
A:
PF0309110=CutA1=FE(14.7=100)
C2:
PF0309110=CutA1=FE(15.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCATGGAGAAAAGGCTGGC
R:
GTGATATAAGTCATAAGTCTCTGCAC
Band lengths:
108-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]