GgaEX6015503 @ galGal3
Exon Skipping
Gene
ENSGALG00000001620 | CUTA
Description
NA
Coordinates
chr17:8983590-8984521:+
Coord C1 exon
chr17:8983590-8983649
Coord A exon
chr17:8984244-8984289
Coord C2 exon
chr17:8984472-8984521
Length
46 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCCTTTTAAATACAGGTA
3' ss Score
8.22
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GGGCATCATGGACAAGAAGCTGGCTGCCTATGTGAACATCCTGCCCAAGAGCTCGGCCTT
Seq A exon
GTATTTCTGGAAAGGGGAACTGGAAGAATCCACTGAAATCCTGCTG
Seq C2 exon
TTAGTAAAAACAAGGACGTCCAAAATAAGTGAACTGTCCAACTATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001620-'6-7,'6-6,7-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=FE(19.6=100)
A:
PF0309110=CutA1=FE(14.7=100)
C2:
PF0309110=CutA1=FE(15.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCATCATGGACAAGAAGCT
R:
CTGACATAGTTGGACAGTTCACT
Band lengths:
110-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]