BtaEX0010438 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001635 | CUTA
Description
Bos taurus cutA divalent cation tolerance homolog (E. coli) (CUTA), mRNA. [Source:RefSeq mRNA;Acc:NM_001075379]
Coordinates
chr23:7534560-7534953:-
Coord C1 exon
chr23:7534894-7534953
Coord A exon
chr23:7534738-7534783
Coord C2 exon
chr23:7534560-7534609
Length
46 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCCTGACCTTTTCAGCTA
3' ss Score
9.31
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GGCTGTGGTGGAGAAGCGCCTAGCAGCCTGCGTCAACCTTGTCCCTCAGATTACATCCAT
Seq A exon
CTATGAGTGGAAAGGAAAGATTGAAGAGGACAGTGAAGTGCTGATG
Seq C2 exon
ATGATCAAAACCCAAAGTTCCTTGGTTCCAGCTCTGACGGATTTTGTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001635_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=FE(19.6=100),PF0079315=DAHP_synth_1=FE(26.3=100)
A:
PF0309110=CutA1=FE(14.7=100),PF0079315=DAHP_synth_1=FE(19.7=100)
C2:
PF0309110=CutA1=FE(15.7=100),PF0079315=DAHP_synth_1=FE(21.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGTGGAGAAGCGCCTAG
R:
CGAACAAAATCCGTCAGAGCTG
Band lengths:
108-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development