MmuEX0013200 @ mm9
Exon Skipping
Gene
ENSMUSG00000024194 | Cuta
Description
cutA divalent cation tolerance homolog (E. coli) [Source:MGI Symbol;Acc:MGI:1914925]
Coordinates
chr17:27075363-27075731:-
Coord C1 exon
chr17:27075672-27075731
Coord A exon
chr17:27075517-27075562
Coord C2 exon
chr17:27075363-27075412
Length
46 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTCTGACCTCTTCAGCTA
3' ss Score
8.48
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GGCAGTGGTAGAGAAGCGTCTGGCAGCCTGCGTCAACCTCATCCCGCAGATCACATCCAT
Seq A exon
CTATGAATGGAAAGGAAAGATCGAGGAAGATAGTGAGGTGCTGATG
Seq C2 exon
ATGATTAAAACCCAAAGCTCCCTGGTCCCTGCTCTGACAGAGTTTGTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024194_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=0.096 C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=FE(19.6=100),PF0079315=DAHP_synth_1=FE(26.3=100)
A:
PF0309110=CutA1=FE(14.7=100),PF0079315=DAHP_synth_1=FE(19.7=100)
C2:
PF0309110=CutA1=FE(15.7=100),PF0079315=DAHP_synth_1=FE(21.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGGTAGAGAAGCGTCTG
R:
CTCTGTCAGAGCAGGGACCAG
Band lengths:
101-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: