RnoEX0025526 @ rn6
Exon Skipping
Gene
ENSRNOG00000000481 | Cuta
Description
cutA divalent cation tolerance homolog [Source:RGD Symbol;Acc:1303306]
Coordinates
chr20:5532487-5532843:-
Coord C1 exon
chr20:5532784-5532843
Coord A exon
chr20:5532630-5532675
Coord C2 exon
chr20:5532487-5532536
Length
46 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTCTGACCTCCTCAGCTA
3' ss Score
7.62
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GGCAGTGGTAGAGAAGCGCCTGGCAGCCTGCGTCAACCTCATCCCGCAGATCACATCCAT
Seq A exon
CTATGAATGGAAAGGAAAGATCGAGGAAGATAGTGAGGTGCTGATG
Seq C2 exon
ATGATTAAAACACAAAGCTCCCTGGTCCCTGCTCTGACAGAGTTTGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000481-'5-7,'5-5,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=FE(19.6=100),PF0079315=DAHP_synth_1=FE(26.3=100)
A:
PF0309110=CutA1=FE(14.7=100),PF0079315=DAHP_synth_1=FE(19.7=100)
C2:
PF0309110=CutA1=FE(15.7=100),PF0079315=DAHP_synth_1=FE(21.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGTAGAGAAGCGCCTG
R:
CTCTGTCAGAGCAGGGACCAG
Band lengths:
100-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]