HsaEX6046651 @ hg19
Exon Skipping
Gene
ENSG00000112514 | CUTA
Description
cutA divalent cation tolerance homolog (E. coli) [Source:HGNC Symbol;Acc:21101]
Coordinates
chr6:33384697-33385087:-
Coord C1 exon
chr6:33385028-33385087
Coord A exon
chr6:33384874-33384919
Coord C2 exon
chr6:33384697-33384746
Length
46 bp
Sequences
Splice sites
3' ss Seq
CTCCCCCTCTGACCTTTCAGCTA
3' ss Score
10.38
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GGCCGTGGTGGAGAAGCGCCTAGCAGCCTGCGTCAACCTCATCCCTCAGATTACATCCAT
Seq A exon
CTATGAGTGGAAAGGGAAGATCGAGGAAGACAGTGAGGTGCTGATG
Seq C2 exon
ATGATTAAAACCCAAAGTTCCTTGGTCCCAGCTTTGACAGATTTTGTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000112514-'6-12,'6-11,8-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=FE(19.6=100),PF0079315=DAHP_synth_1=FE(26.3=100)
A:
PF0309110=CutA1=FE(14.7=100),PF0079315=DAHP_synth_1=FE(19.7=100)
C2:
PF0309110=CutA1=FE(15.7=100),PF0079315=DAHP_synth_1=FE(21.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGTGGAGAAGCGCCTAG
R:
AATCTGTCAAAGCTGGGACCA
Band lengths:
100-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)