RnoEX6016539 @ rn6
Exon Skipping
Gene
ENSRNOG00000018832 | RGD1564854
Description
similar to divalent cation tolerant protein CUTA [Source:RGD Symbol;Acc:1564854]
Coordinates
chr3:13949149-13951557:+
Coord C1 exon
chr3:13949149-13949208
Coord A exon
chr3:13951119-13951164
Coord C2 exon
chr3:13951508-13951557
Length
46 bp
Sequences
Splice sites
3' ss Seq
GATTTCGTCCTCTTCTCTAGGTA
3' ss Score
10.62
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GACCATCCTGGATAAGAAAATGGCTGCATCTGTGAACATCTTGCCTAAGATCTCTACACT
Seq A exon
GTACTTTTGGAAAGGAGAAATAGAAGAAGGCACTGAGGTCTCACTG
Seq C2 exon
CTAATAAAGACAAAGACTTCCAAAGTCCCCTGGCTCTTCGCCTATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018832-'6-3,'6-2,7-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=FE(19.6=100)
A:
PF0309110=CutA1=FE(14.7=100)
C2:
PF0309110=CutA1=FE(15.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCATCCTGGATAAGAAAATGGCT
R:
CGAAGAGCCAGGGGACTTTG
Band lengths:
100-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]