BtaEX6036245 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N6Y4]
Coordinates
chr8:112131596-112134102:+
Coord C1 exon
chr8:112131596-112131655
Coord A exon
chr8:112133768-112133813
Coord C2 exon
chr8:112134053-112134102
Length
46 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTTCTTTTCTCCAGATA
3' ss Score
11.88
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GGCTATCCTGGATAAGAAGCTGGCTGCCTCTGTGAACATCCTGCCTAAGGCCTCCTCACT
Seq A exon
ATACTATTGGAATGGAGAAATAGAAGAAGCCACTGAGGTCCTGTTG
Seq C2 exon
TTAATAAAGACAAAGACTTCCAAGATCCATATGCTTTCCAGCTACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016957-'9-6,'9-5,11-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=FE(19.6=100)
A:
PF0309110=CutA1=FE(14.7=100)
C2:
PF0309110=CutA1=FE(15.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATCCTGGATAAGAAGCTGGC
R:
TGATGTAGCTGGAAAGCATATGGA
Band lengths:
108-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]